It is possible to omit some Top Level Sections from display.
Go to Design / Library / Layouts / Accordion Menu / Glossy Accordion Menu.
Near the bottom is a very long line containing:
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<a sid="<actinic:variable name="SectionID" />".....
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<actinic:block if="%3cactinic%3avariable%20name%3d%22SectionName%22%20%2f%3e%20%21%3d%20%22Books%22" ><a sid="<actinic:variable name="SectionID" />".....
Then look for the very last </actinic:block> in the layout.
Put another </actinic:block> to end the Condition immediately after that so it reads </actinic:block></actinic:block>
Again don't introduce any white space or newlines.
The above Condition looks like: SectionName != "Books" i.e. display everything except books.
A tutorial on Conditions can be found in Actinic's Advanced Guide under "Hiding Things With Conditions".
You can even use PHP in the Condition. E.g.
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<actinic:block if="%21%20stristr%28%3cactinic%3avariable%20name%3d%22SectionName%22%20%2f%3e,%20%27mail%27%29">
NOTE: Updated 13-04-12 to deal with Accordion V2.11 onwards.